The Boucher Lab and the Centres for Disease Control and Prevention in the US have published the genomes of nine Vibrio species suggested to belong to a unique basal lineage of Vibrio cholerae, or a new closely related novel species to V. cholerae. The genome report, "Draft genome sequences of nine Vibrio sp. isolates from across the United States closely related to Vibrio cholerae" was published in Microbiology Resource Announcements today. These new genomes, based on molecular analyses, are at the cusp of the delineating species cutoffs.
Concepts in Evolutionary Studies Workshop – Roscoff, France
Biological network analyses have been recently shown to be a powerful tool in biological sciences, playing a crucial role in identifying such processes as horizontal gene transfer and biogeographic patterns. A five day workshop entitled Introduction the concepts and methods of networks in evolutionary studies ran from June 24-30, 2018 in Roscoff, France. The workshop featured leading mathematicians, computer scientists, and both eukaryotic and prokaryotic biologists to offer a comprehensive introduction to concepts of biological networks with a beautiful seaside view.
Kevin attended this workshop last month where he learned how to combine simple python scripts with cutting edge bioinformatics pipeline to construct and analyze different kinds of biological networks. It is anticipated that network analysis will be an important part of his current research project in characterizing the biogeographic distribution of known Vibrio cholerae strains and reconstructing the evolutionary history of the 7th pandemic lineage.
Kevin enjoying the scenic seaside along with the other 2018 workshop members.
Metagenomics Workshop – Calgary, Alberta
Tareq has just returned from a Genome-centric Metagenomics Workshop hosted by the University of Calgary entitled From community DNA to provisional whole genomes of microbial populations. The workshop consisted of two sessions, with the first part (June 20-22, 2018) with a hands-on approach to generate and prep metagenomic libraries, and the following session (June 25-29, 2018) allowed participants to process the raw dataset into meaningful results.
The workshop was developed by the University of Calgary Energy Bioengineering and Geomicrobiology Research Group.
A group photo of the attendees at the 2018 Metagenomics Workshop hosted at the University of Calgary in Calgary, Alberta.
2018 CIFAR-IMB General Meeting – Banff, Alberta
Banff, Alberta marks the final location for the last annual Integrated Microbial Biodiversity (IMB) meeting hosted by the Canadian Institute for Advanced Research (CIFAR). CIFAR fellows were invited to attend the meeting along with a post-doc or graduate student in their lab as a trainee. The conference was held from June 12-15, 2018, with a trainee workshop hosted on June 11 to help participants assess various career paths within, and outside of, academia. The meeting had intriguing research and interesting talks and discussion from a wide variety of microbial backgrounds.
Yan attended the conference alongside Nora, who presented a poster of her ongoing research entitled "Type VI secretion system effector immunity diversity in intra-location Vibrio cholerae populations". Yan and Nora also unveiled a fun, interactive type VI secretion card game during the meeting that was warmly received by members.
The final IMB meeting finished with prominent scientists from around the world sharing inspiring, cutting edge ideas. Collaboration between members and pioneering research will continue, allowing a greater understanding of the microbial world around us.
Nora behind her research during the poster presentations.